FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005345880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2181470
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6600.030.7569838
AGTCGTA500.00721325427.99881610
TGTCGCC7750.025.74084710
CTGTCGC8400.024.9989439
TCGCCCA8100.024.6285912
GTCGCCC7800.022.88364811
GTCTTGC13100.022.7131291
GTCTCGC7550.020.8638731
TCGCTCT6950.020.648034
GTGTACG1601.1858065E-619.6902791
GTATTAG3750.019.6027661
GTATAGA2951.8189894E-1218.9857311
TATCCCG1301.0579748E-418.8466555
GTGTAAC4250.018.1202051
GTATTAA3350.017.76371
GTCTCAC18050.017.647921
CGGTACT1000.00969159917.5004654
CTTGCTC17750.017.1561723
GTGTAAA6750.017.1135271
TTGCTCT16800.017.0837884
Produced by FastQC (version 0.11.5)