FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005345979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005345979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70477974
Sequences flagged as poor quality0
Sequence length35-151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9321751.3226472713304727No Hit
CCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA920430.13059824903593284No Hit
GGGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTC710550.10081873238864669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)