FastQCFastQC Report
Fri 24 May 2024
EGAF00005346037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93331937
Total Bases11.8 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN12083671.294698298182754No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG1453750.15576125887111933No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT975290.10449692049142835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)