FastQCFastQC Report
Thu 16 May 2024
EGAF00005346246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57145959
Total Bases6.7 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN23053424.034129517364474No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG889930.15572929662445598No Hit
TTTGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG665460.11644917884744922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)