FastQCFastQC Report
Fri 27 May 2022
EGAF00005346289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87724609
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN20348702.319611364696992No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6526880.744019275138633No Hit
CCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA1358070.15481060736332264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)