FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005346341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109241785
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN34805903.1861343166444964No Hit
GTGGGGTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGG1588920.1454498386308865No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1447240.1324804423508825No Hit
GTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACG1315390.12041088490086463No Hit
TGGGGTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGG1303410.11931423493308903No Hit
GTGTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGA1099110.10061259983988728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)