FastQCFastQC Report
Sat 25 May 2024
EGAF00005346461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92441659
Total Bases12.2 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3328850.36010279737623485No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG1662900.17988642977512986No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1023250.11069143620626713No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA980900.10611016836034931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)