FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005346601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90427911
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9355951.0346307789859261No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7392440.8174953859102196No Hit
CCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA2851690.3153550677511504No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA2079690.2299831962279876No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG1583850.17515056827974276No Hit
CTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCA1451280.16049027163748147No Hit
AAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATC1351450.14945053856214816No Hit
CCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCA1314850.1454031156376044No Hit
CCCTTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA1123970.12429458864752499No Hit
TCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAG1066570.11794699094619138No Hit
TCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA1040230.11503417346442957No Hit
CCCATTCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA987300.10918089216945417No Hit
TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT972800.1075774049452497No Hit
GTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACG911110.10075539619620318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)