FastQCFastQC Report
Sat 25 May 2024
EGAF00005346758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103596536
Total Bases13.8 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC64

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4816980.46497500650021734No Hit
GGGGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCG1809370.17465545373061508No Hit
GGGACCGCGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCC1741170.16807222202873656No Hit
GGGAGTCGGTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGA1574080.15194330435913417No Hit
GGGACTCGCCGAATCCCGGGGCCGAGGGAGCGAGACCCGTCGCCGCGCTC1235580.11926846665992769No Hit
GGGACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT1075620.10382779594097626No Hit
TTTAGTCGGTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGA1059800.1023007178541182No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)