FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005346926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005346926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1842504
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTAAA1406.695009E-736.19341
GTCTCGC8000.034.383731
TCTGTCG7300.029.5825048
GTCTTGC16700.029.041411
GTCTAAC4100.028.2485081
GTCTTAC7450.028.1774121
TCGCTCT9200.027.3859984
GTGTAAA11850.026.266941
GTATAAC3057.2577677E-1026.1067161
GTATAGG4550.025.4546991
TGCTACG2001.1256245E-525.1978532
GTCTCAC21600.025.1343061
TCTCGCT10600.025.1299342
CTCGCTC10850.024.549573
GTTTCAC28350.024.3775523
GGGTTTC31300.023.589311
GTATTAG6650.022.8589921
CGCTCTG9700.022.2637275
GTATTAT6550.022.102841
GGTTTCA30200.021.9319062