FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2038661
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC10050.034.6815381
GTCTTGC17500.032.7802471
CGTTTCG1153.1631175E-431.5219549
GTGTTAC8300.030.6205621
TCGCTCT10050.030.3106064
CTCGCTC10400.029.9864623
TCTGTCG7850.028.6307688
CGCTCTG11100.027.432625
GTGTACG2405.1972165E-827.2304291
TCTCGCT11300.026.9576632
CTGTCGC9800.026.6328329
CCGACTA1658.422396E-526.3638139
GTGTATA10100.025.8823871
GTCTCAC23950.025.7713171
GTGTTAG13400.025.4692571
TAAATCG1500.001491332824.1763174
GTATAGC5650.023.1338161
GTGTAGT10050.023.1210251
ATACCCG1902.1883295E-422.903884
GTATTAG7350.022.7228971
Produced by FastQC (version 0.11.5)