FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2580688
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCGA450.0096403348.3339922
TCTGTCG10150.036.4255378
GTCTCGC10450.034.931111
GTCTTGC19000.030.3551331
CTGTCGC13350.029.8664289
GTATAGC4400.028.2068711
TCGCTCT11150.027.9567724
GTACCGC1658.428405E-526.3614433
TATGCGC1100.0096782926.3614433
GTGTTAG14100.025.888661
GTCCTAC7450.025.4786111
GTATTAG7200.025.3493121
TTGCTCT25450.024.7813454
TCTCGCT14750.023.1020132
GGAGTGC53100.023.0724665
CTCGCTC13850.023.0305733
GAGTGCA56700.022.7582476
GTATTGT6750.022.7129821
GTCTTAG9650.022.6961731
GTATTAA6150.022.5547051
Produced by FastQC (version 0.11.5)