FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2117547
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC7700.043.605511
TCTGTCG8700.038.331838
GTATCGC1209.135441E-636.495921
TCGCTCT10250.036.0700534
ACGCGTA1102.4372883E-432.95403145
CTGTCGC10900.032.590469
TCTCGCT10950.029.133342
GTCTTGC18400.028.1653271
GTATTAG6350.027.5874651
GGTATAC4550.027.2716731
GTGTTAG13400.027.235761
CTCGCTC11400.026.7088453
GTATAGG4950.026.5424861
GCGTAAC1100.00936034326.5424841
CGCTCTG12300.026.523355
CGTAACC1100.0096724926.364472
GTATAAC3056.5847416E-1026.3249241
GTCTCAC23650.024.9993171
TTAAGCG1450.00122751524.9978374
GTGTAAC5900.024.7429941
Produced by FastQC (version 0.11.5)