FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1899973
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC8000.050.176671
GTATACG951.8356895E-646.0953141
TCGCTCT9450.042.958554
TCTGTCG7600.040.064848
TCTCGCT10950.035.0914152
CGCTCTG10100.033.7359355
CTCGCTC10950.033.1024933
GTCTTGC15750.032.9008331
CTGTCGC10650.028.590879
GTACTAA4050.027.03121
GTATAGT4350.026.844781
TAACCCG2001.06654115E-525.3737285
TAGTACT4051.8189894E-1225.0591534
TACTCCG1450.00122720824.9987495
GTGTTAC7100.024.6707321
GGAGTGC45050.024.1386345
GTGTTAG12550.023.843461
GAGTGCA47850.023.7873136
GTATTAC5250.023.6329981
GTATAAT4103.45608E-1123.1413461
Produced by FastQC (version 0.11.5)