FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2241134
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGTA855.1427298E-542.924931
GTCTCGC9550.038.205441
TCTGTCG8900.036.656588
GTCTTGC17850.035.975181
TTAGCGT1402.7485554E-531.0708149
CTGTCGC11500.030.2602739
TAGGTCG1204.0622306E-430.2050444
TCGCTCT11200.029.7735424
GGTATAC4250.029.1889531
TCTCGCT12000.028.3965422
GTATTAG7300.026.9897881
GTACACG3005.456968E-1026.7565421
TGTACCG1907.1604754E-626.7105965
CTCGCTC13100.026.0103573
TTGCTCT23850.025.227864
CGCTCTG12550.024.8407045
TAGTACT4101.8189894E-1224.7533994
GTTTCAC31850.023.4448553
GTGTAGT10900.023.4315011
TCTATCG1550.001809393523.3866378
Produced by FastQC (version 0.11.5)