FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2880191
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC12200.039.3034171
TCTGTCG11800.038.7065058
GTCTTGC26800.034.9704441
TCGCTCT14000.033.1528324
TCTCGCT14900.032.1287842
GTATAGG7450.028.2805581
CTCGCTC16100.027.9276583
GTGTAGT13400.027.1088731
CTGTCGC17200.026.9759629
GTATTAA8100.026.9080641
TACCCCG3057.1304385E-1026.1463285
GTGTTAT11250.025.1859471
GTGTAAC9250.025.1335871
GTACTAA5000.024.7016031
CTTGTCG2701.6515696E-724.1659689
GTAGCAC8750.024.0358033
GTATAGC6750.023.6790961
TAATACT8900.023.6307054
TATAGCG1550.001804504723.3977932
CGCTCTG16500.023.2868025
Produced by FastQC (version 0.11.5)