FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2351129
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATATCGA1052.0422987E-523.3326026
GTATAGA4300.021.9802631
TCTGTCG6300.021.110458
TATACTG4900.020.7140775
TAGCGAA850.003792145820.5880332
GTATAGC2900.020.5205251
TCGCTCT6500.020.461774
GTCTCGC6750.020.2254621
GTCGCCC6850.019.9268111
GTAACGC1257.8237324E-519.6023043
GTACGGA900.00527359119.4475571
TATACGT900.005278780619.444255
TCGCCCA7050.019.3619212
GTCTTGC13300.018.6872021
GTATAGT3750.018.6696571
TCTCGCT7550.018.5452272
GTATTAG4550.018.4644951
CTCGCTC7450.018.3243033
GTGTAAG7100.018.2423571
GGTATAC2901.8189894E-1118.1063461
Produced by FastQC (version 0.11.5)