FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2114135
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACACCG1151.4984416E-624.3485345
GTCTTAC4800.024.0666141
TCTGTCG5250.023.9995618
GTGTACG1553.50592E-822.5845051
GTCTCGC5600.021.878741
TCGCTCT5050.021.4857734
TACGGGT850.003791163220.5888354
TCGCCCA6650.020.52642812
CTGTCGC6400.020.2340079
GGTATAC2252.1100277E-1020.2256811
GTGTTAG8550.019.6524831
GTCGCCC6500.019.38426211
TGTCGCC6500.019.38426210
GCGTAGT1451.1162472E-519.3136461
GTACTAT2555.4569682E-1119.2189731
GTATAAG3350.018.8091851
TGTACGC950.007208394418.4228972
GTCTTGC12800.018.3234461
GTATAAA5450.017.9847261
GTGTATA5300.017.8332371
Produced by FastQC (version 0.11.5)