FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2442363
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAT4100.023.9073471
GTCTTGC13900.019.8961721
GTACTAA3000.019.8374061
TATATCG1257.833392E-519.59920970
GTCTCGC5600.019.3789791
AATACCG1301.0564245E-418.850415
TCTGTCG8000.018.8125118
GTATAAC2901.8189894E-1118.1071661
TTACACT6950.017.6298794
GTGTTAG9600.017.5035951
GTATTGG5550.017.0305231
TATCTCG8050.016.9558470
ATCTCGT6850.016.86063470
GTATTAG5200.016.8303781
ATACCGT1300.002288336616.1574946
CCTATAT26750.016.09280870
GTATAGA3950.015.9526431
CTGTCGC10000.015.7500099
GTATTAC3401.9645086E-1015.4443481
GTATAGG2957.792551E-915.4268961
Produced by FastQC (version 0.11.5)