FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2773702
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGA3950.024.8176631
CGATATT2103.6379788E-1223.33284670
TCTGTCG7800.021.9863268
GTCTCGC7900.021.7154561
TGTCGCC8800.020.68101510
CGCTCTG9100.020.3911765
TACACCG1558.731404E-720.329125
GTATTAG5200.020.198441
TCGCTCT9950.019.3529594
GTCTTGC15250.019.0549661
GTGTATA7400.018.9246651
GTATTAT3800.018.4266471
CTGTCGC10700.017.9899549
GTGTACG2155.5810233E-817.9124151
GTATTAC4500.017.8943231
TCTCGCT9800.017.8622442
GTATTAA4550.017.6976811
GTACAGA8950.017.603111
TACACTG10300.016.9957585
GTCGCCC8250.016.96842611
Produced by FastQC (version 0.11.5)