FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1915109
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATCCG750.001830477323.3398975
GTACGGA901.9261918E-423.3392891
GTCTCGC5250.022.6724511
TCTGTCG6000.022.1659558
TACATCG1003.9274845E-421.0059095
TCGCTCT6250.020.725834
ATCTCGT4900.019.99988270
GTCTTGC11750.019.664591
GGGTACG900.005270342319.4494081
GTATTAT4350.019.3152731
CACGAGC5650.019.20342670
CCCGATT1107.482537E-419.08979819
CGTGTTA3200.018.59315310
TTATACT3450.018.2660064
TCTCGCT6750.018.1527792
GTATAAG3900.017.9532991
GTATAGT3550.017.7510071
TGTCGCC7500.017.73276310
GTATTAG4150.017.7153641
GTATAAA4750.017.6887231
Produced by FastQC (version 0.11.5)