FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1915109
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG4800.033.541048
CTGTCGC6100.029.2617479
TGTCGCC6150.026.17837510
GTCGCCC6300.024.99953511
GTCTTAC5050.022.181281
TCGCCCA7500.021.93406912
TCGCTCT4950.021.9187834
GTATTAG3600.021.391841
GTCTCGC5450.021.1955851
GTATAAG3500.021.0028971
GTCTTGC11200.020.940391
GTATAGA3200.020.7841191
GTACGAG1055.4633047E-420.002761
TCTCGCT5950.020.0006732
TACCCGT1055.469076E-419.9996265
GTATATA4650.019.5725941
GTATAAA5400.019.4471281
GTATTAC2900.019.3130111
GTGTTAG8750.018.8025951
CGCTCTG6250.018.4796545
Produced by FastQC (version 0.11.5)