FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2372354
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5750.028.6088688
TGTCGCC7200.022.8473610
CTGTCGC7550.022.715379
AATATCG3450.022.31756470
GTCGCCC6550.020.83894211
GTACCGC850.003785788320.5940021
GTCTTGC13450.020.563381
TATCGCG900.005280232519.44333370
TCGCTCT7450.019.2675484
TCGCCCA7750.018.96705612
GTCTCGC6850.018.9104061
TCTCGCT8150.018.4710392
TCCGTAC1150.001006696118.26563
GTATAAG4000.017.5049021
CGATAAG1000.009677703517.5049021
GTATTAG4250.017.2989621
GTCTTAA4900.017.1476571
GTATATA6350.017.09141
GCGTAGT1452.4354838E-416.9012851
TAACACG2702.406523E-916.8569284
Produced by FastQC (version 0.11.5)