FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2132737
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5600.029.374418
GTCTCGC7200.025.2855681
GTATACG1151.4948146E-624.3553311
TGTCGCC6750.023.33286510
CTGTCGC7550.022.7147759
TCGCTCT6850.022.4886824
TGCGAAA1253.0958854E-622.398512
GTATTAC3550.021.6968251
GTCGCCC5850.021.53701811
CGTTTCG850.003792254520.587829
TCTCGCT8150.020.1897962
CGCTCTG7500.020.0728515
CTCGCTC7750.019.4248873
TCGCCCA6750.019.183912
TAGATCG1107.481001E-419.09052570
TAATACT3700.017.9785124
GTGTTAG8400.017.922191
GTATAGC2357.914423E-917.877851
TAATACG1000.00967582817.5053944
GTGTTAC5050.017.3320731
Produced by FastQC (version 0.11.5)