FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2325689
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATACCGT1004.420017E-728.005736
GTATAAG4050.022.4742151
GGTATAC2056.002665E-1122.2001421
GTCTTGC14750.021.5981031
GTATATA5550.021.446291
GTCTCGC7200.021.3937241
TCTGTCG6300.021.1099828
GTATAGA4000.021.004751
AATACCG1003.9298684E-421.0042975
GTACTAC3150.018.893161
TCGCTCT7800.018.850014
GTATTAT4650.018.821461
GCGTACA950.00721499318.4200679
GTATTAG4450.018.0939771
TGTCGCC7600.017.95956410
GTACGAG1401.8634883E-417.5039581
GTCGCCC7650.017.38469111
GTGTAAG6100.017.2170071
TTGCTCT17500.017.203524
TCTCGCT9200.017.1230682
Produced by FastQC (version 0.11.5)