FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2236227
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5300.022.4518838
GTACTAG2201.5643309E-1020.6851081
GTCTTGC12700.020.6725791
GTATTGT4150.020.2441841
GTACGGG900.00527354119.4475381
GTACTAT2900.019.3134171
GTATTAC2555.4569682E-1119.2187421
GGATACG1107.472145E-419.0939461
ACGGTGT22800.018.88162870
GTATAGA3350.018.8089621
GTCTCGC7400.018.448881
TAATACT4200.018.332564
GTATTAG4850.018.044111
CTGTCGC6450.017.3639979
TCGCTCT8300.017.288434
GTATTAT3750.016.8026711
CGGTGTA15300.016.69938970
CGTATCA1704.3887656E-516.4706370
CGCTCTG8150.016.318335
GTCTAAC2602.762863E-816.1564161
Produced by FastQC (version 0.11.5)