FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2115242
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6150.031.3003468
TACGGCG750.00183319223.334095
GTATAGA4150.022.7750531
CTGTCGC7550.022.7148959
GTCTCGC6200.021.4553531
GTACGAT850.003787975320.5918251
TGTCGCC8050.020.4344810
CGTGTTA2252.1282176E-1020.22192210
GTCTTGC12450.019.6821441
GTCGCCC7300.019.65724211
GTATAGG3600.019.4478341
GTATTAA3250.019.3879931
GATCGTT1451.11803965E-519.3100579
TACACCG1301.0579074E-418.8467665
TCGCTCT7000.018.50064
GTTCGGT950.0072053118.4242631
GTACTAA1903.0044976E-718.4242631
GTACGAG950.0072053118.4242631
TCGCCCA8250.018.24215312
TCTCGCT7100.018.2413222
Produced by FastQC (version 0.11.5)