FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3124038
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC15200.036.4835171
TCTGTCG13000.035.9987538
GTCTTGC29550.033.3897131
TCGCTCT17050.032.092734
GGTATAC5900.031.7373681
CTGTCGC18650.027.0231959
GTTTCAC46400.026.8438993
TCTCGCT18150.026.5822722
GTCTCAC36600.026.3677641
GTATTAG9150.025.9742151
GGGTTTC52150.025.5485941
CGCTCTG18950.024.6957155
CTCGCTC20200.024.2367883
GTACTAT5650.024.2189161
TTGCTCT38450.023.7807144
GTATAGC6450.023.4481811
GGCTAGT10300.023.074181
GTGTTAC12900.022.889891
GTGTTAG22050.022.8633041
TCTGTCA38800.022.6383918
Produced by FastQC (version 0.11.5)