EGAF00005347657 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005347657
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28197212
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGACAACATCTCGTAT	165683	0.5875864606756157	TruSeq Adapter, Index 22 (97% over 38bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGACAACATCGCGTAT	60363	0.21407435600370703	TruSeq Adapter, Index 22 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCGTA	6285	43.636353	44
CGCGTAT	6350	43.22511	45
ACCGGAC	24190	43.134586	33
GATCGGA	24540	43.009903	2
CGGACAA	24320	42.867012	35
AGATCGG	24700	42.70401	1
ATCGGAA	24710	42.610725	3
ATCGCGT	6480	42.49569	43
CTCGTAT	17920	42.447994	45
CACCGGA	24670	42.27709	32
TCTCGTA	18070	42.08318	44
CCGGACA	24780	42.080334	34
TCACCGG	24845	42.00639	31
GTCACCG	24930	41.872192	30
TCGGAAG	25125	41.81726	4
ACACGTC	25135	41.62019	14
CGTCTGA	25350	41.231697	17
CGGAAGA	25560	41.12283	5
ACGTCTG	25605	40.84743	16
ATCTCGT	18820	40.50067	43