EGAF00005347658 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005347658
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28197212
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAATCCGGAGTGTAGATCT	224062	0.7946246600550438	Illumina Single End PCR Primer 1 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	23900	43.587505	13
GCGTCGT	23925	43.56038	12
AGCGTCG	24145	43.489166	11
TAATCCG	23980	43.28965	33
GATCGGA	24585	42.975018	2
AATCCGG	24285	42.801643	34
TCGTGTA	24190	42.75658	15
GTCGTGT	24220	42.721287	14
ATCCGGA	24265	42.715828	35
ATCGGAA	24795	42.48328	3
AGATCGG	24930	42.398342	1
CGTGTAG	24500	42.27023	16
GAGCGTC	25010	42.04801	10
AGAGCGT	25130	41.703976	9
CGGAGTG	25150	41.512726	38
TCGGAAG	25395	41.4884	4
CGGAAGA	25570	41.195953	5
CCGGAGT	25455	40.953667	37
AAGAGCG	25745	40.829082	8
TCCGGAG	25720	40.53559	36