FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4158404
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG19800.038.173288
GTCTCGC18800.036.7083051
GTCTTGC40700.030.8458021
CTGTCGC25250.030.218989
TCGCTCT21300.029.7401814
TCTCGCT24450.027.4397662
CTCGCTC24850.026.070943
GTGTTAG28500.025.7602181
GTGTAAC12600.025.0548761
GGTATAC7950.024.0104641
GTCTCAC51150.023.9698431
CGCTCTG23450.023.9431825
GTGTTAC17650.023.7096141
TTGCTCT55450.023.4972784
GTCTTAC16400.023.278441
GTATAGG12100.023.0564581
GTTTCAC61500.022.9414843
GTATTAA13450.022.9256341
GTATTAT14900.022.6655311
CTTGCTC52400.022.3922043