Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005347956 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4158404 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTGTCG | 1980 | 0.0 | 38.17328 | 8 |
GTCTCGC | 1880 | 0.0 | 36.708305 | 1 |
GTCTTGC | 4070 | 0.0 | 30.845802 | 1 |
CTGTCGC | 2525 | 0.0 | 30.21898 | 9 |
TCGCTCT | 2130 | 0.0 | 29.740181 | 4 |
TCTCGCT | 2445 | 0.0 | 27.439766 | 2 |
CTCGCTC | 2485 | 0.0 | 26.07094 | 3 |
GTGTTAG | 2850 | 0.0 | 25.760218 | 1 |
GTGTAAC | 1260 | 0.0 | 25.054876 | 1 |
GGTATAC | 795 | 0.0 | 24.010464 | 1 |
GTCTCAC | 5115 | 0.0 | 23.969843 | 1 |
CGCTCTG | 2345 | 0.0 | 23.943182 | 5 |
GTGTTAC | 1765 | 0.0 | 23.709614 | 1 |
TTGCTCT | 5545 | 0.0 | 23.497278 | 4 |
GTCTTAC | 1640 | 0.0 | 23.27844 | 1 |
GTATAGG | 1210 | 0.0 | 23.056458 | 1 |
GTTTCAC | 6150 | 0.0 | 22.941484 | 3 |
GTATTAA | 1345 | 0.0 | 22.925634 | 1 |
GTATTAT | 1490 | 0.0 | 22.665531 | 1 |
CTTGCTC | 5240 | 0.0 | 22.392204 | 3 |