FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2188203
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6000.031.4990758
GTCTCGC6150.029.5980381
TCGCTCT6850.027.592954
GTCGCCC7150.024.96430411
TGTCGCC7600.024.40717910
CTGTCGC7500.024.2659559
TCTCGCT7650.023.3347822
TCGCCCA8400.022.91599312
CGCTCTG7900.020.8240785
GTATACG850.003788475420.5913941
GTATAAG3600.020.4198021
TGAATCG3100.020.32198370
GTGTACG1055.4630777E-420.0030691
CTCGCTC8650.019.827823
CACGAGC6050.019.66884470
TAGTACT3400.019.5600364
TAATACT3950.019.494884
GTATAGA2951.8189894E-1218.9859641
GCGTAGT1501.49550215E-518.669531
AGCGTAA950.00721290618.42093316
Produced by FastQC (version 0.11.5)