FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2159163
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG6450.028.7595968
TGTCGCC7450.024.89924610
CTGTCGC7850.023.1846379
GTCCTAC4650.022.5805721
GTATAAA3900.022.4358231
TCGCCCA7600.021.64466712
GTCTCGC5850.021.5383911
GTCGCCC7650.021.50319911
TCGCTCT5900.021.3558624
GTGTAGG6600.020.681751
GTCTTGC13850.019.9638331
GTATATA4800.018.2291071
CGCTCTG6750.018.1480875
GTGTAAA7000.017.999941
GTGTTAA5250.017.3332751
TACGTGT17850.017.25524570
GTCCGGA1503.1608276E-416.3332791
GTTATAC2803.914465E-916.2499453
CGTGTAG10400.016.15416570
GTAATAC2602.768138E-816.1537933
Produced by FastQC (version 0.11.5)