FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1992481
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTACGC750.001833370323.3336181
GTCTCGC5700.023.3336181
TCTGTCG4750.022.1049798
TATACGA952.782642E-422.10497911
TATACCG800.00266802721.8747185
TAAGACT4350.020.9197944
GTATTAC2700.020.7409931
TGCGACA1055.468969E-419.9997412
TAGGCCG2555.4569682E-1119.2154395
ACCCGCG1107.480405E-419.0906627
ATACCGT1107.480405E-419.0906626
TCGCTCT6700.018.2838064
GTATTAT3101.8189894E-1218.0647351
TAATACT3700.017.9731924
GTGTAGT6050.017.9341031
CTGTCGC6650.017.8945069
GTACTAG3002.910383E-1117.5002141
GTATTAG3800.017.5002121
ACCGTAT1000.00969351217.4997758
GTCTTGC12250.017.4287831
Produced by FastQC (version 0.11.5)