FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005347999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005347999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2079207
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCGCA3950.051.3953862
TGCGCAA4400.045.3435443
GTCGTAT901.8189894E-1242.77717611
ATTGCGC5400.038.8930171
CGCAATG3800.033.159825
AGACGGC4950.030.4036170
TGTCGTA1301.6734703E-1029.61496510
AATGTCG1700.028.8231228
TAATGCG500.00721218727.9996059
GCGCAAT6900.027.9001714
ACGGACG700.001226989624.99964770
TCTGTCG4800.024.0621628
GTCTCGC6100.022.9532571
ATGTCGT2056.002665E-1122.1948099
TGTCGCC6050.021.40465510
TATACGA1003.935482E-420.99970211
CTGTCGC5900.020.762429
TTATACG1356.0292605E-620.74044810
GTCTTGC12700.020.3958661
GTCGCCC6000.019.83305511
Produced by FastQC (version 0.11.5)