FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1907116
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG4500.023.333098
CGTGTTA1905.638867E-1022.10503210
CTGTCGC5650.021.0617269
GTATTAC2603.6379788E-1220.1947421
CTACGCT900.00527603719.4457684
GTCTTGC10700.019.3013941
GTATAGG3100.019.1958641
GTATAAT2801.0913936E-1118.7522621
GTCTCGC4200.018.3355461
TGTCGCC6300.018.33314110
GTATAAG3101.8189894E-1218.0666941
GTGTAAA7600.017.9626921
GTATTAA3750.017.7354741
GTATTAT3203.6379788E-1217.5021111
GTACTAC2005.148413E-717.5021111
GTATAAA4000.017.5021111
GTGTTAG7600.016.5809481
ATAGGAC3601.8189894E-1216.5289043
GTGTAAG5900.016.018881
GTGTAGA5250.016.0019281
Produced by FastQC (version 0.11.5)