FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1756260
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG4800.026.9787398
AATACCG1001.3991728E-524.500315
TGTCGCC6200.023.70930310
ATACCGA901.9292724E-423.3336286
TACCGAA750.001833279823.3336287
GTCTTGC12700.022.8743041
CTGTCGC6300.021.6663259
GTATTAC2600.021.5387331
GTCGCCC6000.020.99966611
TCGCCCA6450.020.6198312
TATGCGA850.003791898320.5879110
GTATTAG3350.019.8509961
GTATTGA3850.019.0911481
TAATACT3150.018.8891284
GTGTATA3900.018.8463921
GTATAGA2801.0913936E-1118.7502371
TTGCTCT15300.018.5296444
GTATAAT2952.3646862E-1117.7968351
GTCCTAC3153.6379788E-1217.7780021
GTATTAA3203.6379788E-1217.500221
Produced by FastQC (version 0.11.5)