FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1701481
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGGT400.0024194535.000913
TCTGTCG4150.024.4577488
GTCTCGC3900.021.5402871
TGTCGCC4950.021.21205110
GTATAGA2650.021.1338671
GTACTAT2351.6370905E-1120.8528331
GTGTACG1205.7160265E-520.4183981
TCGCTCT4500.020.222754
ATCTCGT4850.020.20611870
ATACTGA4750.019.8952526
GTATTAT2850.019.6507911
CTGTCGC5800.019.310289
GTCGCCC5050.018.71280911
TCTCGCT4800.018.2296412
GTATTAA2802.0736479E-1017.5014841
GTATAGC1803.6575602E-617.5014841
GTCTTGC10800.017.5014841
TCACGAT1000.00969077417.5004563
TAATACT2802.0736479E-1017.5004544
TCCGCGT1000.00969241317.4999438
Produced by FastQC (version 0.11.5)