FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2203667
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG4950.026.8685048
GTCTACG901.9294467E-423.3337021
ATCTCGT3750.022.39984770
TCGCTCT5650.021.681764
GTCGCCC5900.021.35578711
TGTCGCC6400.021.32797810
CTGTCGC6950.021.1509369
GTCTCAC15200.020.263481
GTATTAC2950.020.1698131
TCGCCCA6600.019.62107812
GTCTCGC5750.019.4785691
TCTCGCT6300.018.8891892
GTATATA4150.018.5545121
GCGTAGT1551.9856743E-518.0648041
GTCTTAC4900.017.8574261
CACGAGC4400.017.49988270
ACGTCTA1000.00969348817.4998813
GTATAGG3450.017.246651
GTCTTGC13350.017.041471
GTATAGC3700.017.0272981
Produced by FastQC (version 0.11.5)