FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2152629
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAATCG1052.028537E-829.99958270
TCTGTCG6100.026.3930768
TGTCGCC6650.023.68443110
CTGTCGC7300.022.5344549
GTATAGG2350.022.3437481
GTCTCGC6350.021.4992581
TCGCTCT6800.020.5908184
GTCGCCC6950.019.6404711
GTACTAG2353.783498E-1019.3645821
GTATAAG3550.018.7351781
GCTAATG7050.018.3685470
GTGTTAG8450.018.2275621
GTACAGT7500.018.2027071
GTGTAAC3101.8189894E-1218.0672021
TCGCCCA7850.017.8345612
CTCGCTC7300.017.7419513
GTATTAG4200.017.5026021
TCTCGCT7600.017.5026022
TTACGCT1000.0096860417.5021954
ACCGTGT3400.017.4997588
Produced by FastQC (version 0.11.5)