FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2153510
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC5600.023.7512451
TCTGTCG5050.022.8708938
GTACACG1253.0927004E-622.4011751
GTCTTGC12950.021.8930381
TCGCTCT5800.021.1208154
CGAATAC1751.2667078E-720.0001270
GTATTAG5000.019.6010281
GGCGTAC900.005276733519.4454651
GTATTAA4000.019.2510091
GTATAGA3100.019.1945531
GTATTAC4050.019.0133421
TCTCGCT6450.018.9928022
CGCTCTG6450.017.9070845
GCGTTAG1200.001341113417.5009171
GTACTAA2601.4624675E-917.5009171
GTATAGG3600.017.5009171
GTATAAC2451.3293175E-817.1437551
TGTCGCC6750.017.11081510
GTATTGC3501.8189894E-1217.000891
CTCGCTC6650.016.8425963
Produced by FastQC (version 0.11.5)