FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1957410
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCGTT1151.8189894E-1236.52118370
TACCTCG853.9574024E-628.8267695
TCTGTCG4600.027.3908868
TCGCTCT5500.024.1845364
GTTTACG750.001831745523.337151
CGCTAAA901.9294134E-423.33357212
GTATAAG3200.022.9725041
GTCTCGC4950.022.6299651
GTCTTAC4350.022.532421
GTCTTGC11200.022.191131
TGTCGCC4950.021.21233710
GTACTAT2650.021.135531
AGTAATG7150.020.55912670
TCTCGCT5750.020.0892142
GTATAAT3200.019.6907181
CTCGCTC6650.019.4758743
GTATACG900.00527317819.4476241
CTGTCGC5950.019.4119639
GTGTATA5050.018.715931
CGCTCTG5800.018.7095
Produced by FastQC (version 0.11.5)