FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1957410
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG5200.027.5959848
TGTCGCC6300.025.55539710
CTGTCGC6250.025.1998449
GTCGCCC6500.021.53832811
GTCTCGC5750.021.3053051
TCGCCCA7000.020.49987212
GTCTTGC10900.020.2302671
GTACTAC2101.9663275E-920.0008961
TCGTGTA11400.019.95601570
GTATTAG4450.019.6638051
TTATACT2900.019.311214
GCCGACC4350.019.31022570
GTATAAG2757.2759576E-1219.0917661
TCGCTCT6550.018.1687554
GTACTAG2155.5952114E-817.907781
GCGCGAT3350.017.76108416
GGCTCGT30150.017.52891370
GCTCGTG23050.017.46193170
GTGTAAT5650.016.7264141
GTCTTAA4000.016.6257461
Produced by FastQC (version 0.11.5)