FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2053606
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG450.00430895831.111535
TCTGTCG5050.030.4947228
TGTCGCC6300.026.6670310
CTGTCGC6600.025.98529
CACGAGC6650.024.21085570
GTCGCCC6100.021.23031211
GTGTAAG5250.019.3340661
TCGCTCT5850.019.145564
GTATTAT3550.018.7331051
GTCTCGC5800.018.7076071
GTCTTGC13350.018.6149391
TTATACG950.00721192318.42130310
GTATAAA4900.017.1435071
TCGCCCA7600.017.04012112
ATCTCGT4950.016.96992970
TCTCGCT6200.016.9361252
GTCTACG1452.4397888E-416.8971941
TCTCGTA4150.016.86769770
GTACAAG4900.016.4291931
GGTATAC2803.912646E-916.2506161
Produced by FastQC (version 0.11.5)