FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2053606
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC5500.022.2743931
TCGCTCT5450.021.1932134
GTCTTGC13150.020.7620091
GGTATAC2750.020.365161
CGACGAA2453.092282E-1119.99954870
GTATTAC3750.019.6014671
GTATAAA5300.018.491951
GTATTGT3650.018.220541
GTATAAG3650.018.220541
GCGTAGA1551.9845622E-518.0658661
GTATAAT3500.018.0013471
GTCTAGC6400.017.5013081
TAATACT3203.6379788E-1217.5004564
TCTGTCG5100.017.1564758
GTGTATA6400.016.9543931
CGCCGTA1250.00176321116.8000362
TGTCGCC6250.016.8000310
TTACACT6950.016.6191394
ACCGTGT3800.016.5785718
GTGTAGT6350.016.536671
Produced by FastQC (version 0.11.5)