FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1939831
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGATA450.004308478431.11215670
TCTGTCG3550.027.6051358
GTCTCGC4600.023.5883541
GTGCGTA900.005278697219.44409411
CTGTCGC5500.018.4542129
GCCGACC3250.018.30830670
TGTCGCC5950.018.23496410
GTCTTAC4800.018.230251
GTCGCCC6350.018.18864811
TAGTACT2551.1277734E-917.8441964
TCGCTCT4950.017.6778164
TAGGCGC1000.00969371117.49968321
GTCCTAC3850.017.273751
CGCCGTA1452.4397831E-416.89711867
TAGTGTA13100.016.83262670
TCTCGCT6050.016.7778552
TAATACT3601.8189894E-1216.5287574
GCCGTAT1503.1597333E-416.33388168
GTCTTGC10300.016.3116471
TCGCCCA7350.016.19018612
Produced by FastQC (version 0.11.5)