FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2068639
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACACCG853.9573806E-628.8269235
GTCTCGC5700.022.724171
TCTATCG1304.348716E-621.53787470
TGTCGCC5600.021.24942210
GTATTAG3150.021.1156391
CACGAGC4700.020.85049670
TCTGTCG5300.020.4711428
GTATAGA3000.019.8375871
GTGTAAA7350.019.5279981
CTCGCTC6700.019.3306353
TCGCTCT6300.018.8911134
ATCTCGT5200.018.8456470
GTCGCCC6150.018.77997611
TCTCGCT6850.018.396772
CTGTCGC5950.018.2347989
TATCTCG5900.017.79612470
CGCTCTG6700.017.7632875
GTCTTGC9900.017.3269461
TCTCGTA3700.017.02656270
GTATAGG3307.2759576E-1216.9733371
Produced by FastQC (version 0.11.5)