FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2068639
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACGAA901.9287092E-423.3349191
GCCGACC4400.020.68172570
CGACTAT1257.830495E-519.5999170
GTATTAT4150.019.3989091
GTCTTGC11500.019.1752171
CGCCGTA1107.4801105E-419.09082467
CGGTGTA12700.019.01566370
GTATAAG3500.018.0012251
GTATTGG4300.017.9081951
TACGGTG24700.017.8541770
GTCTCGC5350.017.6647531
TCTGTCG5750.017.6520948
TACTACG1000.00968911917.5011922
GTGTTAC5400.017.501191
GTATAGT3600.017.501191
CAACGAT1000.00969181617.5003436
GTGTAAG6050.017.3565521
TATACTG4300.017.093365
GTCAACG1250.00176243516.8011421
AGCGTCG1250.00176300516.8003315
Produced by FastQC (version 0.11.5)