FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2048494
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTTGC11450.019.8705431
GTATTAT4350.019.3118461
TCTCGTA4050.019.01196770
GTGTAAC3650.018.2205941
TATACTA3101.8189894E-1218.065485
GTGTAAA8000.017.5013621
CGTAGTG1250.001762616.8008982
GTCGAGA1503.1587755E-416.3346021
GGTATAT4550.016.1551041
TTACCCG1300.002290804216.1547074
GTCTAGA5650.016.1074491
GTCTCGC5000.016.1012521
GTATTAA3501.8189894E-1116.0012451
TCTGTCG4400.015.9087758
ATACCCG1350.002946609415.5563864
GTGTTAG8600.015.4663181
GTATTAG3855.456968E-1215.4557481
GTATATA4550.015.3858131
GTCTAGG6600.015.3799841
GTGTTAC5250.015.3345261
Produced by FastQC (version 0.11.5)