FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005348056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005348056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2048494
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGATTA1900.038.6840270
TCTGTCG5350.024.205498
TGTCGCC6100.022.3769410
CTGTCGC6550.021.3739419
GTCGCCC6700.020.8954211
GTCTCGC6050.019.6707671
CGCCGTA900.00527839619.4443562
GTCTAAT4050.019.0136431
TCGCTCT6300.018.8897194
GTCTTAC5450.018.6251261
TCGCCCA7200.018.47213212
GTCTTGC11250.018.3568121
GTATATA5550.018.2895371
TGTTACG1150.001007922118.2621152
GTGTTAG7950.018.0515481
CTCGCTC6650.017.8959623
GTGTAGG6500.017.7704451
TATATAG3203.6379788E-1217.5011962
GTTACGG1401.8656012E-417.5011963
AAACCGT1200.001341377917.5003436
Produced by FastQC (version 0.11.5)